An olfactory receptor gene underlies reproductive isolation in perfume-collecting orchid bees Supplemental Materials, bioRxiv, 2019-02-02
Speciation is facilitated by the evolution of reproductive barriers that prevent or reduce hybridization among diverging lineages. However, the genetic mechanisms that control the evolution of reproductive barriers remain elusive, particularly in natural populations. We identify a gene associated with divergence in chemical courtship signaling in a pair of nascent orchid bee lineages. Male orchid bees collect perfume compounds from flowers and other sources to subsequently expose during courtship display, thereby conveying information on species identity. We show that these two lineages exhibit differentiated perfume blends and that this change is associated with the rapid evolution of a single odorant receptor gene. Our study suggests that reproductive isolation evolved through divergence of a major barrier gene involved in chemically mediated pre-mating isolation via genetic coupling.
biorxiv evolutionary-biology 100-200-users 2019An olfactory receptor gene underlies reproductive isolation in perfume-collecting orchid bees, bioRxiv, 2019-02-02
Speciation is facilitated by the evolution of reproductive barriers that prevent or reduce hybridization among diverging lineages. However, the genetic mechanisms that control the evolution of reproductive barriers remain elusive, particularly in natural populations. We identify a gene associated with divergence in chemical courtship signaling in a pair of nascent orchid bee lineages. Male orchid bees collect perfume compounds from flowers and other sources to subsequently expose during courtship display, thereby conveying information on species identity. We show that these two lineages exhibit differentiated perfume blends and that this change is associated with the rapid evolution of a single odorant receptor gene. Our study suggests that reproductive isolation evolved through divergence of a major barrier gene involved in chemically mediated pre-mating isolation via genetic coupling.
biorxiv evolutionary-biology 100-200-users 2019Killer whale genomes reveal a complex history of recurrent admixture and vicariance Supplementary Materials, bioRxiv, 2019-01-16
Reconstruction of the demographic and evolutionary history of populations assuming a consensus tree-like relationship can mask more complex scenarios, which are prevalent in nature. An emerging genomic toolset, which has been most comprehensively harnessed in the reconstruction of human evolutionary history, enables molecular ecologists to elucidate complex population histories. Killer whales have limited extrinsic barriers to dispersal and have radiated globally, and are therefore a good candidate model for the application of such tools. Here, we analyse a global dataset of killer whale genomes in a rare attempt to elucidate global population structure in a non-human species. We identify a pattern of genetic homogenisation at lower latitudes and the greatest differentiation at high latitudes, even between currently sympatric lineages. The processes underlying the major axis of structure include high drift at the edge of species' range, likely associated with founder effects and allelic surfing during post-glacial range expansion. Divergence between Antarctic and non-Antarctic lineages is further driven by ancestry segments with up to four-fold older coalescence time than the genome-wide average; relicts of a previous vicariance during an earlier glacial cycle. Our study further underpins that episodic gene flow is ubiquitous in natural populations, and can occur across great distances and after substantial periods of isolation between populations. Thus, understanding the evolutionary history of a species requires comprehensive geographic sampling and genome-wide data to sample the variation in ancestry within individuals.
biorxiv evolutionary-biology 100-200-users 2019Evolutionary Dynamics Do Not Motivate a Single-Mutant Theory of Human Language Supplementary Sections, bioRxiv, 2019-01-10
One of the most controversial hypotheses in cognitive science is the Chomskyan evolutionary conjecture that language arose instantaneously in our species as the result of a single staggeringly fortuitous mutation. Here we analyze the evolutionary dynamics implied by this hypothesis, which has never been formalized. The theory supposes the emergence and fixation of a single mutant (capable of the syntactic operation Merge) during a narrow historical window as a result of frequency-independent selection under a huge fitness advantage in a population of an effective size that is standardly assumed to have been no larger than ~15 000 early humans. We examine this proposal by combining diffusion analysis and extreme value theory to derive a probabilistic formulation of its dynamics. Perhaps counter-intuitively, a macro-mutation is much more unlikely a priori than multiple mutations with smaller fitness effects, yet both hypotheses predict fixation with high conditional probability. The consequences of this asymmetry have not been accounted for previously. Our results diffuse any suggestion that evolutionary reasoning provides an independent rationale for the controversial single-mutant theory of language.
biorxiv evolutionary-biology 0-100-users 2019Ecological causes of speciation and species richness in the mammal tree of life, bioRxiv, 2019-01-05
ABSTRACTBiodiversity is distributed unevenly from the poles to the equator, and among branches of the tree of life, yet how those patterns are related is unclear. We investigated global speciation-rate variation across crown Mammalia using a novel time-scaled phylogeny (N=5,911 species, ~70% with DNA), finding that trait- and latitude-associated speciation has caused uneven species richness among groups. We identify 24 branch-specific shifts in net diversification rates linked to ecological traits. Using time-slices to define clades, we show that speciation rates are a stronger predictor of clade richness than age. Mammals that are low dispersal or diurnal diversify the fastest, indicating roles for geographic and ecological speciation, respectively. Speciation is slower in tropical than extra-tropical lineages, consistent with evidence that longer tropical species durations underpin the latitudinal diversity gradient. These findings juxtapose modes of lineage diversification that are alternatively turnover-based, and thus non-adaptive, or persistence-based as associated with resource adaptations.
biorxiv evolutionary-biology 200-500-users 2019Ecological causes of uneven diversification and richness in the mammal tree of life, bioRxiv, 2019-01-05
AbstractThe uneven distribution of species in the tree of life is rooted in unequal speciation and extinction among groups. Yet the causes of differential diversification are little known despite their relevance for sustaining biodiversity into the future. Here we investigate rates of species diversification across extant Mammalia, a compelling system that includes our own closest relatives. We develop a new phylogeny of nearly all ∼6000 species using a 31-gene supermatrix and fossil node- and tip-dating approaches to establish a robust evolutionary timescale for mammals. Our findings link the causes of uneven modern species richness with ecologically-driven variation in rates of speciation andor extinction, including 24 detected shifts in net diversification. Speciation rates are a stronger predictor of among-clade richness than clade age, countering claims of clock-like speciation in large phylogenies. Surprisingly, speciation rate heterogeneity in recent radiations shows limited association with latitude, despite the well-known increase in species richness toward the equator. Instead, we find a deeper-time association where clades of high-latitude species have the highest speciation rates, suggesting that species durations are shorter (turnover is higher) outside than inside the tropics. At shallower timescales (i.e., young clades), diurnality and low vagility are both linked to greater speciation rates and extant richness. We suggest that high turnover among small-ranged allopatric species has erased the signal of vagility in older clades, while diurnality has adaptively promoted lineage persistence. These findings highlight the underappreciated joint roles of ephemeral (turnover-based) and adaptive (persistence-based) processes of diversification, which manifest in recent and more ancient evolutionary radiations of mammals to explain modern diversity.Author SummaryThe over 6000 living species in the mammalian tree of life are distributed unevenly among branches so that similarly aged groups sometimes differ many fold in species richness (e.g., ∼2500 rodent species versus 8 pangolins). Why differential bursts of species diversification occur, and how long they persist, has implications for sustaining biodiversity. Here we develop a robust evolutionary timescale for most extant species, recovering signatures of rate-variable diversification linked to ecological factors. Mammals with low dispersal or that are day-active show the fastest recent speciation rates, consistent with mechanisms of allopatric isolation and ecological opportunity, respectively. Speciation is surprisingly faster in extra-tropical than tropical lineages, suggesting that longer species durations for tropical lineages underpin the latitudinal diversity gradient in mammal.
biorxiv evolutionary-biology 200-500-users 2019